Visualize DESeq2 result in an interactive Shiny app — interactivate.DESeqDataSet • InteractiveComplexHeatmap

Visualize DESeq2 result in an interactive Shiny app

# S3 method for DESeqDataSet
interactivate(x, res = DESeq2::results(x), seed = 123, ...)

Arguments

x: A DESeqDataSet class object. It is normally returned by DESeq.
res: The object returned by results.
seed: Random seed. It is mainly set for the random colors of annotations.
...: Other arguments.

Examples

if(interactive()) {
    require(airway)
    data(airway)
    se = airway

    require(DESeq2)
    dds = DESeqDataSet(se, design = ~ dex)
    keep = rowSums(counts(dds)) >= 10
    dds = dds[keep, ]
    dds$dex = relevel(dds$dex, ref = "untrt")
    dds = DESeq(dds)

    interactivate(dds)
}