cola

一致性聚类（consensus clustering）统一框架。

基本信息

软件包	链接
编程语言	R, C++, JavaScript
Bioconductor	https://bioconductor.org/packages/cola/
GitHub	https://github.com/jokergoo/cola
文档	https://jokergoo.github.io/cola/
论文	Zuguang Gu, et al., Improve consensus partitioning via a hierarchical procedure. Briefings in Bioinformatics 2022. Zuguang Gu, et al., cola: an R/Bioconductor package for consensus partitioning through a general framework. Nucleic Acids Research 2021.

例子

标准一致性聚类：

mat = adjust_matrix(mat) # optional
rl = run_all_consensus_partition_methods(
    mat, 
    top_value_method = c("SD", "MAD", ...),
    partition_method = c("hclust", "kmeans", ...),
    cores = ...)
cola_report(rl, output_dir = ...)

或者等级一致性聚类：

mat = adjust_matrix(mat) # optional
rh = hierarchical_partition(mat, mc.cores = ...)
cola_report(rh, output_dir = ...)