OBO Foundry is a database of public biological ontologies. In this document, we import all ontologies on OBO Foundry and generate circular visualization, similarity heatmap and runtime performance on them.
id
: ID of the ontology.title
: Title of the ontology.n_terms
: Number of terms.n_relations
: Number of relations.is_tree
: Whether the DAG is a tree. The DAG is a tree if n_terms == n_relations + 1.pa_avg
: Average number of parent terms.ch_avg
: Average number of child terms.asp1
: width/height
, where width
is the largest number of terms on a specific distance to root (i.e. max(table(largest_dist_to_root(dag)))
). height
is the 99% percentile of heights of all terms.asp2
: width/height
, where width
is the largest number of terms on a specific distance to root (i.e. max(table(shortest_dist_to_root(dag)))
). height
is the 99% percentile of heights of all terms.d_max
: Maximal depth of terms.