Similarity between terms based on the overlap of genes

Similarity between terms based on the overlap of genes

term_similarity(gl, method = c("kappa", "jaccard", "dice", "overlap"))

Arguments

gl

A list of genes that are in the terms.

method

The similarity measurement.

Details

The definition of the four similarity measurements can be found at https://jokergoo.github.io/simplifyEnrichment_supplementary/supplS01_coefficient_definition/supplS01_coefficient_definition.html .

Value

A symmetric matrix.

Examples

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