Supplementary file S03. Examples of simplifyEnrichment

This page contains results for functional enrichment clustering done by the simplifyEnrichment package.

Random GO

• random_BP (Based on semantic similarity matrix)
• random_CC (Based on semantic similarity matrix)
• random_MF (Based on semantic similarity matrix)
• random_BP_dice
• random_BP_jaccard
• random_BP_kappa
• random_BP_overlap

On EBI Expression Atlas datasets

GO

• EBI_Expression_Atlas_GO_BP (Based on semantic similarity matrix)
• EBI_Expression_Atlas_GO_BP_dice
• EBI_Expression_Atlas_GO_BP_jaccard
• EBI_Expression_Atlas_GO_BP_kappa
• EBI_Expression_Atlas_GO_BP_overlap

DO

• EBI_Expression_Atlas_DO (Based on semantic similarity matrix)
• EBI_Expression_Atlas_DO_dice
• EBI_Expression_Atlas_DO_jaccard
• EBI_Expression_Atlas_DO_kappa
• EBI_Expression_Atlas_DO_overlap

KEGG

• EBI_Expression_Atlas_KEGG_dice
• EBI_Expression_Atlas_KEGG_jaccard
• EBI_Expression_Atlas_KEGG_kappa
• EBI_Expression_Atlas_KEGG_overlap

Reactome

• EBI_Expression_Atlas_Reactome_dice
• EBI_Expression_Atlas_Reactome_jaccard
• EBI_Expression_Atlas_Reactome_kappa
• EBI_Expression_Atlas_Reactome_overlap

MsigDB_C2_CGP

• EBI_Expression_Atlas_MsigDB_C2_CGP_dice
• EBI_Expression_Atlas_MsigDB_C2_CGP_jaccard
• EBI_Expression_Atlas_MsigDB_C2_CGP_kappa
• EBI_Expression_Atlas_MsigDB_C2_CGP_overlap

MsigDB_C3_GTRD

• EBI_Expression_Atlas_MsigDB_C3_GTRD_dice
• EBI_Expression_Atlas_MsigDB_C3_GTRD_jaccard
• EBI_Expression_Atlas_MsigDB_C3_GTRD_kappa
• EBI_Expression_Atlas_MsigDB_C3_GTRD_overlap

MsigDB_C3_MIR_Legacy

• EBI_Expression_Atlas_MsigDB_C3_MIR_Legacy_dice
• EBI_Expression_Atlas_MsigDB_C3_MIR_Legacy_jaccard
• EBI_Expression_Atlas_MsigDB_C3_MIR_Legacy_kappa
• EBI_Expression_Atlas_MsigDB_C3_MIR_Legacy_overlap

MsigDB_C3_MIRDB

• EBI_Expression_Atlas_MsigDB_C3_MIRDB_dice
• EBI_Expression_Atlas_MsigDB_C3_MIRDB_jaccard
• EBI_Expression_Atlas_MsigDB_C3_MIRDB_kappa
• EBI_Expression_Atlas_MsigDB_C3_MIRDB_overlap

MsigDB_C3_TFT_Legacy

• EBI_Expression_Atlas_MsigDB_C3_TFT_Legacy_dice
• EBI_Expression_Atlas_MsigDB_C3_TFT_Legacy_jaccard
• EBI_Expression_Atlas_MsigDB_C3_TFT_Legacy_kappa
• EBI_Expression_Atlas_MsigDB_C3_TFT_Legacy_overlap

MsigDB_C4_CGN

• EBI_Expression_Atlas_MsigDB_C4_CGN_dice
• EBI_Expression_Atlas_MsigDB_C4_CGN_jaccard
• EBI_Expression_Atlas_MsigDB_C4_CGN_kappa
• EBI_Expression_Atlas_MsigDB_C4_CGN_overlap

MsigDB_C4_CM

• EBI_Expression_Atlas_MsigDB_C4_CM_dice
• EBI_Expression_Atlas_MsigDB_C4_CM_jaccard
• EBI_Expression_Atlas_MsigDB_C4_CM_kappa
• EBI_Expression_Atlas_MsigDB_C4_CM_overlap

MsigDB_C7_IMMUNESIGDB

• EBI_Expression_Atlas_MsigDB_C7_IMMUNESIGDB_dice
• EBI_Expression_Atlas_MsigDB_C7_IMMUNESIGDB_jaccard
• EBI_Expression_Atlas_MsigDB_C7_IMMUNESIGDB_kappa
• EBI_Expression_Atlas_MsigDB_C7_IMMUNESIGDB_overlap