Supplementary file S10. Compare similarity measurements - EBI Expression Atlas datasets

We compared the clusterings on the similarity matrices with different similarity measurements.

dataset	semantic	Jaccard	Dice	overlap	kappa
Compare similarity measurements - random_GO_BP	x	x	x	x	x
Compare similarity measurements - EBI_Expression_Atlas_GO_BP	x	x	x	x	x
Compare similarity measurements - EBI_Expression_Atlas_DO	x	x	x	x	x
Compare similarity measurements - EBI_Expression_Atlas_KEGG		x	x	x	x
Compare similarity measurements - EBI_Expression_Atlas_Reactome		x	x	x	x
Compare similarity measurements - EBI_Expression_Atlas_MsigDB_C2_CGP		x	x	x	x
Compare similarity measurements - EBI_Expression_Atlas_MsigDB_C3_GTRD		x	x	x	x
Compare similarity measurements - EBI_Expression_Atlas_MsigDB_C3_MIR_Legacy		x	x	x	x
Compare similarity measurements - EBI_Expression_Atlas_MsigDB_C3_MIRDB		x	x	x	x
Compare similarity measurements - EBI_Expression_Atlas_MsigDB_C3_TFT_Legacy		x	x	x	x
Compare similarity measurements - EBI_Expression_Atlas_MsigDB_C4_CGN		x	x	x	x
Compare similarity measurements - EBI_Expression_Atlas_MsigDB_C4_CM		x	x	x	x
Compare similarity measurements - EBI_Expression_Atlas_MsigDB_C7_IMMUNESIGDB		x	x	x	x