Add rectangles on Hilbert curve — hc_rect-GenomicHilbertCurve-method • HilbertCurve

Add rectangles on Hilbert curve

# S4 method for GenomicHilbertCurve
hc_rect(object, gr, gp = gpar(fill = "red", col = "red"),
    mean_mode = c("w0", "absolute", "weighted", "max_freq"))

Arguments

object: a GenomicHilbertCurve-class object
gr: a GRanges object which contains the genomic regions to be mapped to the curve
gp: pass to hc_rect,HilbertCurve-method
mean_mode: pass to hc_rect,HilbertCurve-method

Details

It is basically a wrapper of hc_rect,HilbertCurve-method.

Value

Refer to hc_rect,HilbertCurve-method

Author

Zuguang Gu <z.gu@dkfz.de>

Examples

require(circlize)
require(GenomicRanges)
bed = generateRandomBed(nr = 100)
gr = GRanges(seqnames = bed[[1]], ranges = IRanges(bed[[2]], bed[[3]]))
hc = GenomicHilbertCurve()
hc_rect(hc, gr, gp = gpar(fill = rand_color(length(gr))))