Add text to Hilbert curve — hc_text-GenomicHilbertCurve-method • HilbertCurve

Add text to Hilbert curve

# S4 method for GenomicHilbertCurve
hc_text(object, gr, labels, gp = gpar(),
    centered_by = c("interval", "polygon"), ...)

Arguments

object: a GenomicHilbertCurve-class object
gr: a GRanges object which contains the genomic regions to be mapped to the curve
labels: pass to hc_text,HilbertCurve-method
gp: pass to hc_text,HilbertCurve-method
centered_by: how to define the "center" of the interval represented in Hilbert curve. Pass to hc_text,HilbertCurve-method.
...: pass to hc_text,HilbertCurve-method

Details

It is basically a wrapper of hc_text,HilbertCurve-method.

Value

Refer to hc_text,HilbertCurve-method

Author

Zuguang Gu <z.gu@dkfz.de>

Examples

require(circlize)
require(GenomicRanges)
bed = generateRandomBed(nr = 20)
gr = GRanges(seqnames = bed[[1]], ranges = IRanges(bed[[2]], bed[[3]]))
hc = GenomicHilbertCurve()
hc_text(hc, gr, labels = sample(letters, nrow(bed), replace = TRUE))