All BioCarta pathways
all_pathways()A vector of pathway IDs (the primary pathway IDs on BioCarta).
The original BioCarta website (biocarta.com) is retired, but the full list of pathways can be found from archived websites such as https://web.archive.org/web/20170122225118/https://cgap.nci.nih.gov/Pathways/BioCarta_Pathways or https://www.gsea-msigdb.org/gsea/msigdb/human/genesets.jsp?collection=CP:BIOCARTA.
all_pathways()
#> [1] "h_RELAPathway" "h_no1Pathway"
#> [3] "h_gsPathway" "h_CSKPathway"
#> [5] "h_pkcPathway" "h_srcRPTPPathway"
#> [7] "h_amiPathway" "h_granulocytesPathway"
#> [9] "h_lympathway" "h_lymphocytePathway"
#> [11] "h_arapPathway" "h_agrPathway"
#> [13] "h_acrPathway" "h_akap95Pathway"
#> [15] "h_aktPathway" "h_alkPathway"
#> [17] "h_ParkinsonsPathway" "h_alternativePathway"
#> [19] "h_At1rPathway" "h_ace2Pathway"
#> [21] "h_anthraxPathway" "h_asbcellPathway"
#> [23] "h_mhcPathway" "h_DNAfragmentPathway"
#> [25] "h_chemicalPathway" "h_sppaPathway"
#> [27] "h_atmPathway" "h_agpcrPathway"
#> [29] "h_bcrmolecule" "h_bcellsurvivalPathway"
#> [31] "h_blymphocytePathway" "h_pparPathway"
#> [33] "h_sumoPathway" "h_bcrPathway"
#> [35] "h_biopeptidesPathway" "h_botulinPathway"
#> [37] "h_ranklPathway" "h_bard1Pathway"
#> [39] "h_btg2Pathway" "h_bbcellPathway"
#> [41] "h_CaCaMPathway" "h_cdMacPathway"
#> [43] "h_HBxPathway" "h_flumazenilPathway"
#> [45] "h_carm-erPathway" "h_caspasePathway"
#> [47] "h_argininecPathway" "h_methioninepathway"
#> [49] "h_cblPathway" "h_CCR3Pathway"
#> [51] "h_cd40Pathway" "h_cdc25Pathway"
#> [53] "h_mcmPathway" "h_g1Pathway"
#> [55] "h_g2Pathway" "h_cell2cellPathway"
#> [57] "h_LairPathway" "h_ceramidePathway"
#> [59] "h_tidPathway" "h_chrebpPathway"
#> [61] "h_hSWI-SNFpathway" "h_circadianPathway"
#> [63] "h_classicPathway" "h_compPathway"
#> [65] "h_vdrPathway" "h_hdacPathway"
#> [67] "h_gcrPathway" "h_ctcfPathway"
#> [69] "h_ctlPathway" "h_cxcr4Pathway"
#> [71] "h_fbw7Pathway" "h_ranPathway"
#> [73] "h_cellcyclePathway" "h_cftrPathway"
#> [75] "h_cytokinePathway" "h_inflamPathway"
#> [77] "h_d4gdiPathway" "h_rarPathway"
#> [79] "h_dcPathway" "h_p35alzheimersPathway"
#> [81] "h_dicerPathway" "h_rnaPathway"
#> [83] "h_mta3Pathway" "h_skp2e2fPathway"
#> [85] "h_calcineurinPathway" "h_egfPathway"
#> [87] "h_eicosanoidPathway" "h_etcPathway"
#> [89] "h_ndkDynaminPathway" "h_ephA4Pathway"
#> [91] "h_epoPathway" "h_ecmPathway"
#> [93] "h_erkPathway" "h_erythPathway"
#> [95] "h_eponfkbPathway" "h_eradPathway"
#> [97] "h_EfpPathway" "h_eifPathway"
#> [99] "h_extrinsicPathway" "h_fasPathway"
#> [101] "h_fcer1Pathway" "h_fibrinolysisPathway"
#> [103] "h_fMLPpathway" "h_fosbPathway"
#> [105] "h_freePathway" "h_slrp2Pathway"
#> [107] "h_fxrPathway" "h_tubbyPathway"
#> [109] "h_erbB4pathway" "h_gabaPathway"
#> [111] "h_GATA3pathway" "h_appPathway"
#> [113] "h_ghrelinPathway" "h_glycolysisPathway"
#> [115] "h_setPathway" "h_ghPathway"
#> [117] "h_ahspPathway" "h_tcapoptosisPathway"
#> [119] "h_vifPathway" "h_HivnefPathway"
#> [121] "h_hopPathway" "h_salmonellaPathway"
#> [123] "h_mPRPathway" "h_hcmvPathway"
#> [125] "h_p53hypoxiaPathway" "h_hifPathway"
#> [127] "h_ifnaPathway" "h_ifngPathway"
#> [129] "h_igf1Pathway" "h_il17Pathway"
#> [131] "h_il18Pathway" "h_il2Pathway"
#> [133] "h_il3Pathway" "h_il4Pathway"
#> [135] "h_il5Pathway" "h_il6Pathway"
#> [137] "h_il10Pathway" "h_il2rbPathway"
#> [139] "h_il7Pathway" "h_IL12Pathway"
#> [141] "h_il22bppathway" "h_gsk3Pathway"
#> [143] "h_deathPathway" "h_RacCycDPathway"
#> [145] "h_gleevecpathway" "h_HuntingtonPathway"
#> [147] "h_reckPathway" "h_insulinPathway"
#> [149] "h_integrinPathway" "h_iresPathway"
#> [151] "h_intrinsicPathway" "h_ionPathway"
#> [153] "h_raccPathway" "h_keratinocytePathway"
#> [155] "h_tcraPathway" "h_lectinPathway"
#> [157] "h_g1pPathway" "h_pyk2Pathway"
#> [159] "h_Lis1Pathway" "h_LDLpathway"
#> [161] "h_malatePathway" "h_egfr_smrtePathway"
#> [163] "h_mapkPathway" "h_mCalpainPathway"
#> [165] "h_AcetaminophenPathway" "h_pparaPathway"
#> [167] "h_npcPathway" "h_melanocytepathway"
#> [169] "h_cb1rPathway" "h_etsPathway"
#> [171] "h_cptPathway" "h_monocytePathway"
#> [173] "h_mspPathway" "h_mTORPathway"
#> [175] "h_mrpPathway" "h_pitx2Pathway"
#> [177] "h_igf1rPathway" "h_ngfPathway"
#> [179] "h_vipPathway" "h_ErbB3Pathway"
#> [181] "h_neutrophilPathway" "h_nfkbPathway"
#> [183] "h_nfatPathway" "h_nthiPathway"
#> [185] "h_nos1Pathway" "h_no2il12Pathway"
#> [187] "h_rarrxrPathway" "h_nuclearRsPathway"
#> [189] "h_aifPathway" "h_tertpathway"
#> [191] "h_tercPathway" "h_ox40Pathway"
#> [193] "h_arenrf2Pathway" "h_p38mapkPathway"
#> [195] "h_p53Pathway" "h_pdgfPathway"
#> [197] "h_pelp1Pathway" "h_Ccr5Pathway"
#> [199] "h_ptdinsPathway" "h_plcdPathway"
#> [201] "h_plcPathway" "h_plcePathway"
#> [203] "h_edg1Pathway" "h_cdk5Pathway"
#> [205] "h_myosinPathway" "h_plateletAppPathway"
#> [207] "h_cpsfPathway" "h_ps1Pathway"
#> [209] "h_prionPathway" "h_pepiPathway"
#> [211] "h_akapCentrosomePathway" "h_notchpathway"
#> [213] "h_ptenPathway" "h_rabPathway"
#> [215] "h_rac1Pathway" "h_rasPathway"
#> [217] "h_nkcellsPathway" "h_rbPathway"
#> [219] "h_reelinPathway" "h_badPathway"
#> [221] "h_plk3Pathway" "h_ck1Pathway"
#> [223] "h_eif2Pathway" "h_eif4Pathway"
#> [225] "h_stemPathway" "h_dspPathway"
#> [227] "h_p27Pathway" "h_pgc1aPathway"
#> [229] "h_cremPathway" "h_sam68Pathway"
#> [231] "h_pmlPathway" "h_npp1Pathway"
#> [233] "h_dreampathway" "h_leptinPathway"
#> [235] "h_rhoPathway" "h_akap13Pathway"
#> [237] "h_RNApol3Pathway" "h_antisensePathway"
#> [239] "h_atrbrcaPathway" "h_cardiacegfPathway"
#> [241] "h_her2Pathway" "h_erk5Pathway"
#> [243] "h_malPathway" "h_mef2dPathway"
#> [245] "h_mitochondriaPathway" "h_achPathway"
#> [247] "h_parkinPathway" "h_cdc42racPathway"
#> [249] "h_ppargPathway" "h_ranMSpathway"
#> [251] "h_tob1Pathway" "h_barr-mapkPathway"
#> [253] "h_bArrestin-srcPathway" "h_SARSpathway"
#> [255] "h_hesPathway" "h_nktPathway"
#> [257] "h_malatexPathway" "h_MITRPathway"
#> [259] "h_il1rPathway" "h_metPathway"
#> [261] "h_gpcrPathway" "h_igf1mtorpathway"
#> [263] "h_slrpPathway" "h_soddPathway"
#> [265] "h_shhPathway" "h_ptc1Pathway"
#> [267] "h_smPathway" "h_spryPathway"
#> [269] "h_s1pPathway" "h_stat3Pathway"
#> [271] "h_stathminPathway" "h_aMANpathway"
#> [273] "h_hsp27Pathway" "h_ctbp1Pathway"
#> [275] "h_ranbp2Pathway" "h_PDZsPathway"
#> [277] "h_tcrmolecule" "h_tcrPathway"
#> [279] "h_tcytotoxicPathway" "h_thelperPathway"
#> [281] "h_tall1Pathway" "h_telPathway"
#> [283] "h_tgfbPathway" "h_th1th2Pathway"
#> [285] "h_41bbPathway" "h_ctla4Pathway"
#> [287] "h_longevityPathway" "h_pcafpathway"
#> [289] "h_prc2Pathway" "h_eosinophilsPathway"
#> [291] "h_eea1Pathway" "h_Par1Pathway"
#> [293] "h_stressPathway" "h_tnfr1Pathway"
#> [295] "h_tnfr2Pathway" "h_tollPathway"
#> [297] "h_TPOPathway" "h_crebPathway"
#> [299] "h_carm1Pathway" "h_dbpbPathway"
#> [301] "h_tffPathway" "h_trkaPathway"
#> [303] "h_tsp1Pathway" "h_arfPathway"
#> [305] "h_ucalpainPathway" "h_vegfPathway"
#> [307] "h_vobesityPathway" "h_rhodopsinPathway"
#> [309] "h_vitCBPathway" "h_WNVpathway"
#> [311] "h_wntPathway" "h_wnt-lrp6Pathway"
#> [313] "h_actinYPathway" "h_bArrestinPathway"