All functions

BioCartaImage-package BioCartaImage

The BioCartaImage package

all_pathways()

All BioCarta pathways

grid.biocarta() biocartaGrob()

Draw a BioCarta pathway

BIOCARTA_PATHWAYS PATHWAY2BC PATHWAY2ENTREZ PATHWAY2MSIGDB BC2ENTREZ

Pre-computed data objects

genes_in_pathway()

Genes in a pathway

get_pathway()

Get a single pathway

get_pathway_image() image_dimension()

Download the pathway image

makeContext(<biocarta_pathway_grob>) grobWidth(<biocarta_pathway_grob>) grobHeight(<biocarta_pathway_grob>)

Internal functions for drawing the pathway grob

mark_gene()

Mark a gene on the pathway image

pos_by_polygon()

Position around a polygon

print(<biocarta_pathway>)

Print the biocarta_pathway object