Collect classes from HierarchicalPartition object

# S4 method for HierarchicalPartition
collect_classes(object, merge_node = merge_node_param(),
    show_row_names = FALSE, row_names_gp = gpar(fontsize = 8),
    anno = get_anno(object[1]), anno_col = get_anno_col(object[1]), ...)

Arguments

object: A HierarchicalPartition-class object.
merge_node: Parameters to merge sub-dendrograms, see merge_node_param.
show_row_names: Whether to show the row names.
row_names_gp: Graphic parameters for row names.
anno: A data frame of annotations for the original matrix columns. By default it uses the annotations specified in hierarchical_partition.
anno_col: A list of colors (color is defined as a named vector) for the annotations. If anno is a data frame, anno_col should be a named list where names correspond to the column names in anno.
...: Other arguments.

Details

The function plots the hierarchy of the classes.

Value

No value is returned.

Author

Zuguang Gu <z.gu@dkfz.de>

Examples

data(golub_cola_rh)
collect_classes(golub_cola_rh)

collect_classes(golub_cola_rh, merge_node = merge_node_param(depth = 2))