get_stats-ConsensusPartitionList-method.RdGet statistics
# S4 method for ConsensusPartitionList
get_stats(object, k, all_stats = FALSE)A ConsensusPartitionList-class object.
Number of subgroups. The value can only be a single value.
Whether to show all statistics that were calculated. Used internally.
A matrix of partition statistics for a selected k. Rows in the matrix correspond to combinations of top-value methods and partitioning methods.
data(golub_cola)
get_stats(golub_cola, k = 2)
#> k 1-PAC mean_silhouette concordance area_increased Rand
#> SD:skmeans 2 1.0000000 0.9878910 0.9950000 0.4867348 0.5121283
#> CV:skmeans 2 1.0000000 0.9754655 0.9894444 0.4882527 0.5121283
#> MAD:skmeans 2 1.0000000 0.9772774 0.9902778 0.4880495 0.5121283
#> ATC:skmeans 2 1.0000000 0.9953240 0.9977778 0.5070513 0.4933490
#> SD:mclust 2 0.9970162 0.9456561 0.9780556 0.4899062 0.5121283
#> CV:mclust 2 1.0000000 0.9706630 0.9875000 0.4762775 0.5246479
#> MAD:mclust 2 0.9139596 0.9429971 0.9766667 0.4749382 0.5246479
#> ATC:mclust 2 1.0000000 0.9684868 0.9819444 0.3406818 0.6494523
#> SD:kmeans 2 1.0000000 0.9748797 0.9791667 0.4747670 0.5179969
#> CV:kmeans 2 1.0000000 0.9783007 0.9902778 0.4746695 0.5246479
#> MAD:kmeans 2 1.0000000 0.9954798 0.9900000 0.4704740 0.5246479
#> ATC:kmeans 2 0.9420544 0.9542907 0.9802778 0.5032466 0.4945227
#> SD:pam 2 0.7695347 0.9214171 0.9597222 0.4823156 0.5246479
#> CV:pam 2 0.6931519 0.8694426 0.9394444 0.4967491 0.5027387
#> MAD:pam 2 0.8002634 0.9045510 0.9588889 0.4857005 0.5121283
#> ATC:pam 2 0.8959614 0.9368121 0.9705556 0.4982240 0.4992175
#> SD:hclust 2 0.8125549 0.9108634 0.9577778 0.4567157 0.5402973
#> CV:hclust 2 0.5627744 0.8160426 0.9097222 0.4450421 0.5492958
#> MAD:hclust 2 0.5610184 0.8694379 0.9308333 0.4588383 0.5320814
#> ATC:hclust 2 0.8867428 0.8665934 0.9472222 0.4958534 0.4992175
#> Jaccard
#> SD:skmeans 0.5121283
#> CV:skmeans 0.5121283
#> MAD:skmeans 0.5121283
#> ATC:skmeans 0.4933490
#> SD:mclust 0.5121283
#> CV:mclust 0.5246479
#> MAD:mclust 0.5246479
#> ATC:mclust 0.6494523
#> SD:kmeans 0.5179969
#> CV:kmeans 0.5246479
#> MAD:kmeans 0.5246479
#> ATC:kmeans 0.4945227
#> SD:pam 0.5246479
#> CV:pam 0.5027387
#> MAD:pam 0.5121283
#> ATC:pam 0.4992175
#> SD:hclust 0.5402973
#> CV:hclust 0.5492958
#> MAD:hclust 0.5320814
#> ATC:hclust 0.4992175