Genes in a pathway — genes_in_pathway • BioCartaImage

Genes in a pathway

genes_in_pathway(pathway)

Arguments

pathway: A BioCarta pathway ID, a MSigDB ID or a biocarta_pathway object. All valid BioCarta pathway IDs are in all_pathways(). The list of MSigDB IDs for BioCarta pathways can be found at https://www.gsea-msigdb.org/gsea/msigdb/human/genesets.jsp?collection=CP:BIOCARTA.

Value

A character vector of Entrez IDs.

Examples

genes_in_pathway("h_RELAPathway")
#>  [1] "1387" "8772" "8841" "4792" "1147" "3551" "8517" "4790" "2033" "5970"
#> [11] "8737" "7124" "7132" "7133" "8717" "7189"