Compare Signatures from Different Nodes

# S4 method for HierarchicalPartition
compare_signatures(object, merge_node = merge_node_param(),
    method = c("euler", "upset"), upset_max_comb_sets = 20,
    verbose = interactive(), ...)

Arguments

object: A HierarchicalPartition-class object.
merge_node: Parameters to merge sub-dendrograms, see merge_node_param.
method: Method to visualize.
upset_max_comb_sets: Maximal number of combination sets to show.
verbose: Whether to print message.
...: Other arguments passed to get_signatures,HierarchicalPartition-method.

Details

It plots an Euler diagram or a UpSet plot showing the overlap of signatures from different nodes. On each node, the number of subgroups is inferred by suggest_best_k,ConsensusPartition-method.

Examples

data(golub_cola_rh)
compare_signatures(golub_cola_rh)