Heatmap of top rows

Heatmap of top rows

# S4 method for ConsensusPartition
top_rows_heatmap(object, top_n = min(object@top_n), k = NULL,
    anno = get_anno(object), anno_col = get_anno_col(object),
    scale_rows = object@scale_rows, ...)

Arguments

object

A ConsensusPartition-class object.

top_n

Number of top rows.

k

Number of subgroups. If it is not specified, it uses the "best k".

anno

A data frame of annotations.

anno_col

A list of colors (color is defined as a named vector) for the annotations. If anno is a data frame, anno_col should be a named list where names correspond to the column names in anno.

scale_rows

Wether to scale rows.

...

Pass to top_rows_heatmap,matrix-method.

Value

No value is returned.

See also

top_rows_heatmap,matrix-method

Author

Zuguang Gu <z.gu@dkfz.de>

Examples

# \donttest{
data(golub_cola)
top_rows_heatmap(golub_cola["ATC:skmeans"])

# }