cola_supplementary

This repository contains supplementary files for the manuscript ‘cola: an R/Bioconductor Package for Consensus Partitioning through a General Framework’.

• Supplementary file 1: The ATC Method
• Supplementary file 2: Compare Top-value Methods
• Supplementary file 3: Jaccard Index
• Supplementary file 4: Examples of cola Analysis
• Supplementary file 5: Similarity between Partitions
• Supplementary file 6: Compare Row and Column Sampling
• Supplementary file 7: Compare the Numbers of Samplings
• Supplementary file 8: Running Time of Different Partitioning Methods
• Supplementary file 9: Application of cola on Methylation Dataset
• Supplementary file 10: Golub Leukemia Dataset Analysis - Impact of Row Scaling (Two-group Classification)
• Supplementary file 11: Golub Leukemia Dataset Analysis - Impact of Row Scaling (Three-group Classification)