All available ontology names of the GREAT job

All available ontology names of the GREAT job

# S4 method for GreatJob
availableOntologies(object, category = NULL)

Arguments

object

A GreatJob-class object returned by submitGreatJob.

category

one or multiple categories. All available categories can be got by availableCategories.

Details

The values of the supported ontologies sometime change. You should run the function to get the real-time values. The meaning of ontology returned is quite self-explained by the name.

Value

The returned values is a vector of ontologies.

Author

Zuguang gu <z.gu@dkfz.de>

Examples

job = readRDS(system.file("extdata", "GreatJob.rds", package = "rGREAT"))
availableOntologies(job)
#> [1] "GO Molecular Function"     "GO Biological Process"    
#> [3] "GO Cellular Component"     "Mouse Phenotype"          
#> [5] "Mouse Phenotype Single KO" "Human Phenotype"          
#> [7] "Ensembl Genes"