Extend TSS

Extend TSS

extendTSSFromOrgDb(orgdb, verbose = great_opt$verbose, ...)

Arguments

orgdb

Name of "org.*" packages from Bioconductor. All supported OrgDb packages are in rGREAT:::BIOC_ANNO_PKGS$orgdb.

verbose

Whether to print messages.

...

All pass to extendTSS.

Value

A GRanges object with one meta column 'gene_id'.

Examples

if(FALSE) {
extendTSSFromOrgDb("Org.Hs.eg.db")
extendTSSFromOrgDb("hg19")
}