Extend TSS

Extend TSS

extendTSSFromTxDb(txdb, verbose = great_opt$verbose, ...)

Arguments

txdb

Name of "TxDb.*" packages from Bioconductor. All supported TxDb packages are in rGREAT:::BIOC_ANNO_PKGS$txdb. Note short genome version can also be used here such as "hg19" or "hg19.knownGene".

verbose

Whether to print messages.

...

All pass to extendTSS.

Value

A GRanges object with one meta column 'gene_id'.

Examples

if(FALSE) {
extendTSSFromTxDb("TxDb.Hsapiens.UCSC.hg19.knownGene")
extendTSSFromTxDb("hg19")
}