Plot region-gene associations — plotRegionGeneAssociations-GreatObject-method • rGREAT

Plot region-gene associations

# S4 method for GreatObject
plotRegionGeneAssociations(object, term_id = NULL, which_plot = 1:3)

Arguments

object: A GreatObject-class object returned by great.
term_id: Term ID.
which_plot: Which plots to draw? The value should be in 1, 2, 3. See "Details" section for explanation.

Details

There are following figures:

Association between regions and genes (which_plot = 1).
Distribution of distance to TSS (which_plot = 2).
Distribution of absolute distance to TSS (which_plot = 3).

Examples

obj = readRDS(system.file("extdata", "GreatObject.rds", package = "rGREAT"))
plotRegionGeneAssociations(obj)