anno_word_cloud_from_GO.Rd
Word cloud annotations from GO
The same format as in anno_word_cloud
.
The value should be in the same format as align_to
. If go_id
is a vector, it should have the same length as align_to
, and if go_id
is a list, note, e.g. length(go_id[[1]])
is not necessarily equal to length(align_to[[1]]
. If align_to
is a categorical vector and go_id
is a list, names of go_id
should have overlap to the levels in align_to
.
Minimal value for stat
for selecting keywords.
What type of value to map to font sizes of the keywords. There are two possible values. "pvalue": enrichment is applied to keywords and -log10(p-value) is used to map to font size; "count": simply word frequency of keywords.
Alternatively the GO description can be set via the term
argument. The same format as in anno_word_cloud
.
The words excluced for construcing word cloud. Some words are internally exclucded: c("via", "protein", "factor", "side", "type", "specific")
.
All other arguments passed to anno_word_cloud
.
# There is no example
NULL
#> NULL