Word cloud annotations from GO
Arguments
- align_to
The same format as in
anno_word_cloud
.- go_id
The value should be in the same format as
align_to
. Ifgo_id
is a vector, it should have the same length asalign_to
, and ifgo_id
is a list, note, e.g.length(go_id[[1]])
is not necessarily equal tolength(align_to[[1]]
. Ifalign_to
is a categorical vector andgo_id
is a list, names ofgo_id
should have overlap to the levels inalign_to
.- stat
What type of value to map to font sizes of the keywords. There are two possible values. "pvalue": enrichment is applied to keywords and -log10(p-value) is used to map to font size; "count": simply word frequency of keywords.
- min_stat
Minimal value for
stat
for selecting keywords.- term
Alternatively the GO description can be set via the
term
argument. The same format as inanno_word_cloud
.- exclude_words
The words excluced for construcing word cloud. Some words are internally exclucded:
c("via", "protein", "factor", "side", "type", "specific")
.- ...
All other arguments passed to
anno_word_cloud
.