Make volcano plot

Make volcano plot

# S4 method for GreatJob
plotVolcano(object, ontology, min_region_hits = 5,
    x_values = c("fold_enrichment", "z-score"),
    y_values = c("p_value", "p_adjust"),
    main = NULL)

Arguments

object

A GreatJob-class object returned by submitGreatJob.

ontology

A single ontology names. Valid values are in availableOntologies.

min_region_hits

Minimal number of input regions overlapping to the geneset associated regions.

x_values

Which values for the x-axis.

y_values

Which values for the y-axis.

main

Title of the plot.

Details

Since the enrichment is an over-representation test, it is only the half volcano.

Examples

# There is no example
NULL
#> NULL