Supported methods
all_term_IC_methods(require_anno = NULL)
all_term_sim_methods(require_anno = NULL)
all_group_sim_methods(require_anno = NULL)If it is set to TRUE, methods that require external annotations are only returned. If
it is set to FALSE, methods that do not require annotations are returned. A value of NULL returns both.
A character vector of all supported methods.
all_term_IC_methods(): A vector of all supported IC methods.
all_term_sim_methods(): A vector of all supported term similarity methods.
all_group_sim_methods(): A vector of all supported group similarity methods.
all_term_IC_methods()
#> [1] "IC_offspring" "IC_height" "IC_annotation" "IC_universal"
#> [5] "IC_Zhang_2006" "IC_Seco_2004" "IC_Zhou_2008" "IC_Seddiqui_2010"
#> [9] "IC_Sanchez_2011" "IC_Meng_2012" "IC_Wang_2007"
all_term_sim_methods()
#> [1] "Sim_Lin_1998" "Sim_Resnik_1999" "Sim_FaITH_2010"
#> [4] "Sim_Relevance_2006" "Sim_SimIC_2010" "Sim_XGraSM_2013"
#> [7] "Sim_EISI_2015" "Sim_AIC_2014" "Sim_Zhang_2006"
#> [10] "Sim_universal" "Sim_Wang_2007" "Sim_GOGO_2018"
#> [13] "Sim_Rada_1989" "Sim_Resnik_edge_2005" "Sim_Leocock_1998"
#> [16] "Sim_WP_1994" "Sim_Slimani_2006" "Sim_Shenoy_2012"
#> [19] "Sim_Pekar_2002" "Sim_Stojanovic_2001" "Sim_Wang_edge_2012"
#> [22] "Sim_Zhong_2002" "Sim_AlMubaid_2006" "Sim_Li_2003"
#> [25] "Sim_RSS_2013" "Sim_HRSS_2013" "Sim_Shen_2010"
#> [28] "Sim_SSDD_2013" "Sim_Jiang_1997" "Sim_Kappa"
#> [31] "Sim_Jaccard" "Sim_Dice" "Sim_Overlap"
#> [34] "Sim_Ancestor"
all_group_sim_methods()
#> [1] "GroupSim_pairwise_avg" "GroupSim_pairwise_max"
#> [3] "GroupSim_pairwise_BMA" "GroupSim_pairwise_BMM"
#> [5] "GroupSim_pairwise_ABM" "GroupSim_pairwise_HDF"
#> [7] "GroupSim_pairwise_MHDF" "GroupSim_pairwise_VHDF"
#> [9] "GroupSim_pairwise_Froehlich_2007" "GroupSim_pairwise_Joeng_2014"
#> [11] "GroupSim_SimALN" "GroupSim_SimGIC"
#> [13] "GroupSim_SimDIC" "GroupSim_SimUIC"
#> [15] "GroupSim_SimUI" "GroupSim_SimDB"
#> [17] "GroupSim_SimUB" "GroupSim_SimNTO"
#> [19] "GroupSim_SimCOU" "GroupSim_SimCOT"
#> [21] "GroupSim_SimLP" "GroupSim_Ye_2005"
#> [23] "GroupSim_SimCHO" "GroupSim_SimALD"
#> [25] "GroupSim_Jaccard" "GroupSim_Dice"
#> [27] "GroupSim_Overlap" "GroupSim_Kappa"