GroupSim_pairwise_Froehlich_2007

GroupSim_pairwise_Froehlich_2007

GroupSim_pairwise_Froehlich_2007(
  dag,
  group1,
  group2,
  term_sim_method = NULL,
  IC_method = NULL,
  verbose = simona_opt$verbose,
  ...
)

Methods

GroupSim_pairwise_Froehlich_2007

The similarity is:

group_sim = exp(-HDF(group1, group2))

The term semantic similarity method and the IC method can be set via control argument:

group_sim(dag, group1, group2, method = "GroupSim_pairwise_Froehlich_2007"
    control = list(term_sim_method = "Sim_Lin_1998", IC_method = "IC_annotation")`.

Other parameters for the term_sim_method can also be set in the control list.

Paper link: doi:10.1186/1471-2105-8-166 .