Sim_Dice

Sim_Dice

Sim_Dice(dag, terms, anno_universe = NULL, verbose = simona_opt$verbose)

Methods

Sim_Dice

Denote two sets A and B as the items annotated to term a and b. The similarity value is the Dice coeffcient of the two sets, defined as 2*length(intersect(A, B))/(length(A) + length(B)).

The universe or the background can be set via parameter anno_universe:

term_sim(dag, terms, method = "Sim_Dice",
    control = list(anno_universe = ...))