Sim_Jaccard

Sim_Jaccard

Sim_Jaccard(dag, terms, anno_universe = NULL, verbose = simona_opt$verbose)

Methods

Sim_Jaccard

Denote two sets A and B as the items annotated to term a and b. The similarity value is the Jaccard coeffcient of the two sets, defined as length(intersect(A, B))/length(union(A, B)).

The universe or the background can be set via parameter anno_universe:

term_sim(dag, terms, method = "Sim_Jaccard",
    control = list(anno_universe = ...))