Generate gene sets by mapping to orthologues — gs_map_to_orthologues • GSEAtopics

Generate gene sets by mapping to orthologues

Usage

gs_map_to_orthologues(gs, from, to)

Arguments

gs: A list of gene sets. Genes should be in the EntreZ ID type.
from: Latin name of the "from" organism.
to: Latin name of the "to" organism.

Details

Gene IDs in gs must be EntreZ IDs.

Gene sets are removed if none of the genes can ba mapped.

Examples

gs_human = load_msigdb_genesets()$gs
gs_dolphin = gs_map_to_orthologues(gs_human, from = "Homo.sapiens", 
    to = "Tursiops.truncatus")
#>