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GSEA plot

Source: R/gsea_plot.R
gsea_plot.Rd

GSEA plot

Usage

gsea_plot(s, which, gs, col = seq_along(which), panel_height = c(6, 1, 3))

Arguments

s

A numeric vector of gene scores with gene IDs as names.

which

Which gene sets to draw. Multiple gene sets are allowed. The value can be integer indices or names in gs.

gs

A list of gene sets. Genes should have the same gene ID type as in s.

col

Colors.

panel_height

Relative height of the three panels in the plot.

Examples

data(p53_dataset)
s = p53_dataset$s2n
gs = p53_dataset$gs

gsea_plot(s, "p53hypoxiaPathway", gs)

gsea_plot(s, 1:3, gs)