Get GO gene sets from OrgDb object — get_GO_gene_sets_from_orgdb • GSEAtraining

Get GO gene sets from OrgDb object

get_GO_gene_sets_from_orgdb(
  orgdb,
  ontology = "BP",
  gene_id_type = c("ENTREZID", "SYMBOL", "ENSEMBL"),
  as_table = FALSE
)

Arguments

orgdb: An OrgDb object.
ontology: "BP", "CC" or "MF".
gene_id_type: Which gene ID type to use.
as_table: Whether to return a list or a two-column data frame?