Similarity between terms based on overlap — term_similarity • GSEAtraining

Similarity between terms based on overlap

term_similarity(
  gl,
  method = c("kappa", "jaccard", "dice", "overlap"),
  all = NULL,
  remove_negative = TRUE
)

Arguments

gl: A list of items
method: The similarity measurement.
all: The universe set.
remove_negative: If the value is negative, reset to zero

Value

A symmetric matrix.